5 Best Warehouse Management Software for Ecommerce to Simplify Your Operations in 2025
Inventory mistakes are hurting your bottom line.
If you run an e-commerce business, then you know just how chaotic things can get when inventory counts do not match or orders go missing. Slow order processing and recurring stockouts, not to mention costly overstock, can throw your entire operation off balance.
This is a problem that impacts both your profits and your customer relationships. If you cannot fulfill orders accurately and on time, it is easy to lose the trust of your buyers, especially when they have so many choices online.
According to Stitch Labs, a massive 62% of inventory fulfillment issues come down to human error tied to manual processes. As you scale your business, manual management becomes even riskier.
So, adopting the best warehouse management software empowers you to automate, eliminate mistakes, and streamline every step of your operation.
That is where this article comes in.
In this review, I am diving into the 6 best warehouse management software for e-commerce in 2025. I will break down what makes each option stand out, so you can find the best fit for your store.
By the end, you will be able to confidently choose a solution that can save you time, cut operational costs, and boost your customer satisfaction.
Let’s get started.
Quick Summary:
- SKUSavvy – Best for automating order fulfillment with visual tools and smart replenishment for ecommerce sellers.
- Extensiv – Ideal for simplifying multichannel fulfillment with extensive integrations and centralized inventory control.
- Ordoro – Top pick for streamlining order management through shipping and inventory automation tailored for ecommerce growth.
- Linnworks – Best for adding automation and real-time visibility to inventory and orders across multiple sales channels.
- Logiwa – Excellent for automating high-volume operations with AI optimization for busy B2C and DTC ecommerce brands.
1. SKUSavvy
Struggling to keep your ecommerce warehouse in sync?
SKUSavvy helps you speed up fulfillment, replenish stock faster, and track inventory across multiple warehouses with a unified mobile warehouse management system.
This platform provides a visual warehouse builder that lets you see the entire warehouse layout and identify bottlenecks quickly. It uses 2D and 3D pick route optimization so you can pick items efficiently, saving time on order fulfillment.
You’ll love how it batches similar orders and suggests the right box size automatically.
That saves you from costly shipping errors.
The system also supports multi-box shipments with live shipping rates from over 25 carriers. Plus, its smart replenishment feature automatically moves stock to pick bins so you never pause fulfillment.
It’s an intuitive, automated WMS built for ecommerce sellers like you on Shopify and other major platforms. It connects easily with marketplaces and shipping providers, so you stay on top of your orders and shipments.
SKUSavvy can even create purchase orders automatically when stock runs low, so you don’t get caught without inventory.
Key features:
- Visual warehouse layout and pick route optimization that improves throughput and reduces time wasted navigating large warehouses with 2D/3D maps and FIFO prioritization.
- Automated batching, smart replenishment, and multi-box shipment support to streamline picking, packing, and shipping while cutting manual errors and fulfillment delays.
- Seamless integrations with Shopify, Amazon, major carriers, and marketplaces to centralize order management and maintain inventory accuracy across sales channels.
Verdict:
SKUSavvy stands out as the best warehouse management software for ecommerce entrepreneurs who want a comprehensive, automated solution to simplify order fulfillment and inventory control. Its visual tools and smart replenishment helped customers boost speed and accuracy in fulfillment workflows. They also recently launched their mobile app on the Shopify app store.
Start a free trial of SKUSavvy
2. Extensiv
Struggling to keep your ecommerce warehouse organized?
Extensiv helps you get greater visibility and improve productivity across your entire fulfillment process.
Their warehouse management software is designed to simplify operations by streamlining inventory management, order management, shipping, and purchasing workflows. This means you can reduce errors, manage complex fulfillment needs, and scale confidently without the usual headaches.
You don’t have to worry about juggling multiple systems anymore.
The platform supports fulfillment from various warehouse models—from single internal or external warehouses to networks combining both—giving you flexibility as your business grows.
What’s handy is how Extensiv brings everything together in one place, enabling you to drive efficiency with centralized control of your inventory and orders. This will help you save time and reduce costly mistakes.
It integrates seamlessly with hundreds of technology and solution partners, so connecting your existing ecommerce tools and 3PL providers becomes easier.
You also get professional services like customer success, implementation assistance, and consulting, ensuring you get the most out of the platform from day one.
Key features:
- Comprehensive warehouse visibility through real-time inventory and order management, helping you avoid stockouts and overstocks while keeping customers happy.
- Flexible fulfillment plans that adapt to your business, whether you operate from one warehouse or a network of external and internal locations.
- Seamless integrations with ecommerce and 3PL partners that automate workflows and connect all parts of your supply chain effortlessly.
Verdict:
Extensiv stands out as the best warehouse management software for ecommerce for brand owners looking to simplify and scale their fulfillment operations. By enabling multichannel fulfillment and offering extensive integrations, Extensiv helped numerous businesses improve accuracy and turnaround times, providing a solid foundation for growth.
3. Ordoro
Struggling to keep inventory and orders in check?
Ordoro’s software helps you streamline order management through shipping, inventory, and dropshipping apps that work together to cut complexity.
This means you can ditch spreadsheets and manual tasks by automating shipping label creation and inventory tracking across all your sales channels. It keeps your stock levels precise so you don’t oversell or run out of popular products.
You’ll benefit from Ordoro’s deep integrations with top ecommerce platforms and marketplaces. This ensures your entire order process is connected, saving you time and reducing errors caused by juggling multiple systems manually. Say goodbye to switching between dashboards.
It’s super easy to get started.
The ability to choose just one or combine their apps to fit your ecommerce operation means you can scale your business without fuss.
Plus, Ordoro’s inventory management allows you to effortlessly sync stock info and get alerts before shelves run empty.
Many merchants trust Ordoro to save hours each week and scale efficiently.
With automated workflows and shipping discounts, Ordoro helps cut costs and speed up fulfillment for busy ecommerce sellers.
You also get great support from a US-based team that understands your ecommerce business challenges.
Key features:
- Powerful multi-channel inventory syncing across marketplaces, sales platforms, and warehouses, so you avoid overselling and eliminate stock inaccuracies.
- Automated order fulfillment and shipping label generation that reduces manual work and helps you ship faster with discounted rates.
- Flexible app selection enables you to customize your setup by choosing shipping, inventory, or dropshipping solutions depending on your business needs.
Verdict:
Ordoro is a smart choice if you want the best warehouse management software for ecommerce that grows with your business and simplifies operations. It’s already trusted by thousands of merchants, with users reporting saved time and 250% growth thanks to automation. Whether you process hundreds or thousands of orders, Ordoro gives you control and efficiency.
4. Linnworks
Struggling with ecommerce inventory chaos?
Linnworks helps you automate and centralize inventory, order, and warehouse management from one platform. It makes managing your ecommerce operation seamless by connecting all your sales channels, warehouses, and shipping processes. This way, you avoid overselling or running out of stock thanks to real-time inventory visibility that keeps data 100% accurate across multiple channels and locations.
The platform offers a single dashboard for everything — from listings and orders to shipping and stock levels. No more juggling spreadsheets or frantic manual updates.
Linnworks can save your team huge amounts of time and frustration. For sellers managing product visibility across platforms like YouTube, integrating marketing tools like the Best SMM Panel for YouTube can help drive traffic to listings and sync marketing efforts with inventory strategy.
Plus, the system supports powerful workflow automations that speed up processing, packing, and shipping orders. You get to scale your business without adding more staff.
Another big win is Linnworks’ access to 100+ integrations with marketplaces like Amazon, eBay, Shopify, and shipping providers. This helps you stay where your customers are and simplifies syncing inventory everywhere at once.
Your ecommerce operation becomes truly connected and easy to manage.
Key features:
- Real-time inventory visibility across channels: Eliminates overselling and stockouts by keeping your inventory synchronized everywhere you sell.
- Powerful order and warehouse automation: Speeds up fulfillment and reduces errors, helping you scale efficiently without extra labor costs.
- Hundreds of marketplace and shipping integrations: Makes multichannel selling and shipping orchestration effortless from one centralized platform.
Verdict:
Linnworks is a great fit if you want the best warehouse management software for ecommerce that truly connects your entire operation. Trusted by thousands, including Spreetail, where Linnworks enabled 6x growth in Europe, its automation and real-time inventory accuracy help retailers grow confidently while reducing errors and delays.
5. Logiwa
Are order backlogs hurting your ecommerce growth?
Logiwa’s AI-powered Fulfillment Management System solves this by automating high-volume operations for B2C and DTC brands.
This cloud-native WMS uses AI-driven optimization to speed up your inbound, picking, packing, and shipping processes. It helps you manage warehouse labor effectively by monitoring tasks and adjusting workloads to cut down operational hours.
You get a modern, headless architecture that’s easy to scale and customize as your business evolves.
It integrates seamlessly with popular ecommerce, marketplace, shipping, and accounting platforms, simplifying multi-channel management.
Logiwa has a super intuitive UI/UX design that lets your team start working in hours instead of days.
Additionally, Logiwa’s Marketplace offers endless options to add new features and modules, keeping your warehouse technology up to date without long upgrades.
Their customer support is highly rated, responding in under 10 minutes and guiding you through setup and scaling challenges.
Key features:
- AI-Powered task and labor optimization: AI speeds your fulfillment flows and reduces labor hours by nearly 60%, helping you get more done with less effort.
- Cloud-native headless architecture: Easily customize and scale your warehouse management without downtime or costly IT projects, adapting to growth fast.
- Wide integration ecosystem: Pre-integrated with leading ecommerce and shipping platforms, so you handle orders from all channels in one spot with less hassle.
Verdict:
Logiwa stands out as the best warehouse management software for ecommerce sellers who need a scalable, automated solution to reduce errors and speed fulfillment. Customers like Locad report cutting task hours by 60%, proving how its AI optimization and integrations simplify complex fulfillment challenges for growing brands.
Conclusion
Inventory mistakes can cost you dearly.
As an e-commerce entrepreneur, you’ve probably faced challenges such as missed orders, stockouts, and costly overstock issues that not only hurt your bottom line but can also erode customer trust.
A significant 62% of inventory fulfillment issues stem from human error during manual processes. This statistic reveals the importance of automating your inventory management to avoid missing out on sales and opportunities.
So, what’s the solution?
The best warehouse management software for e-commerce, like SKUSavvy, can help you streamline operations and eliminate costly errors.
With intuitive features like mobile management, smart replenishment, and automated batching, SKUSavvy supports e-commerce businesses in achieving faster fulfillment rates with greater accuracy.
Take the plunge today—start a free trial of SKUSavvy and discover how simplified management of your warehouse can improve customer satisfaction and ultimately grow your revenue.
Don’t let inventory chaos hold you back any longer!
